Chalmers
 
 
 

Adil Mardinoglu, PhD

Department of Chemical and Biological Engineering,
Chalmers University of Technology,
Kemivägen 10, SE-412 96 Göteborg, Sweden
Phone: –
Fax: +46(0)31 772 3801
E-mail: adilm [at] chalmers.se
Office: Room 3043
   

Education and degrees
2000-2004 Electronic and Telecommunication Engineering,  Istanbul Technical University, Turkey
2004-2005 Electronic Engineering, Waterford Institute of Technology, Ireland
2005-2009 Ph.D. in Engineering, Waterford Institute of Technology, Ireland

Employments
2005-2009
Research Assistant, Materials Characterisation and Processing Group (MCP), SEAM Research Centre, Waterford Institute of Technology, Ireland.
2009-2010
Visiting Post doc, Centre for Research on Adaptive Nanostructures and Nanodevices (CRANN), Trinity College Dublin, Ireland.
2009-2010
Post doc, Telecommunications Software & Systems Group (TSSG), Waterford Institute of Technology, Ireland.
2010-
Post doc, Department of Chemical and Biological Engineering, Chalmers

Publications, Patents & Presentations
Publications
2008
P. J. Cregg, K. Murphy and A. Mardinoglu, Calculation of nanoparticle capture efficiency in magnetic drug targeting, Journal of Magnetism and Magnetic Materials,320, 3272–3275, 2008.
2009 P. J. Cregg, K. Murphy and A. Mardinoglu, Inclusion of magnetic dipole-dipole and hydrodynamic interactions in implant assisted magnetic drug targeting, Journal ofMagnetism and Magnetic Materials, 321, 3893–3898, 2009.
2010 P. J. Cregg, K. Murphy and A. Mardinoglu, Drug loaded magnetic nanoparticles for cancer therapy, Waterford Institute of Technology Research Matters, 11, 8–9, 2010.
  P. J. Cregg, K. Murphy, A. Mardinoglu and A. Prina-Mello, Inclusion of many particle magnetic dipole-dipole and hydrodynamic interactions in implant assisted magnetic drug targeting, Journal of Magnetism and Magnetic Materials, 322, 2087–2094, 2010.
2011 P. J. Cregg, K. Murphy and A. Mardinoglu, Review; Inclusion of Interactions in Mathematical Modelling of Implant Assisted Magnetic Drug Targeting, Accepted by Applied Mathematical Modelling, 2011.
  Sasitharan Balasubramaniam, Noreen T. Boyle, Andrea Della Chiesa, Adil Mardinoglu, Frank Walsh, Dmitri Botvich, Adriele Prina-Mello, Development of Artificial Neuronal Networks for Molecular Communication, Accepted by Nano Communication Networks.
 

Frank Walsh, Noreen T. Boyle, Adil Mardinoglu, Andrea Della Chiesa, Dmitri Botvich, Adriele Prina-Mello, Sasitharan Balasubramaniam, Artificial Backbone Neuronal Network for Nano Scale Sensors, 30th IEEE International Conference on Computer Communications Proceedings, 449–454, 2011
  A. Mardinoglu, P. J. Cregg, K. Murphy, M. Curtin and A. Prina-Mello, Theoretical Modelling of Physiologically Stretched Vessel in Magnetisable Stent Assisted Magnetic Drug Targeting Application, Journal of Magnetism and Magnetic Materials, 323, 324–329, 2011.
Talks  

2010

 A. Mardinoglu, Mathematical Modelling of Stent Assisted Magnetic Drug Targeting System in a Stretched Vessel, OpenFOAM International Conference, 2010, Munich, Germany.
  A. Mardinoglu, Validation of implant assisted magnetic drug targeting modelling, Bioengineering in Ireland, 2010, Dublin, Ireland.
2011 A. Mardinoglu, Natapol Pornputtapong, Rasmus Ågren, Intawat Nookaew, Sergio Bordel Velasco and Jens Nielsen, Identification of Metabolic Processes in Various Human Tissues for Reconstruction of Tissue Specific Human Metabolic Network,  SBE's 3rd International Conference on Biomolecular Engineering, San Francisco, USA, 2011.

Poster presentations

2006

 P. J. Cregg, K. Murphy and A. Mardinoglu, Inclusion of interparticle interactions in the modelling of magnetic drug targeting, 6th  International Scientific and ClinicalApplications of Magnetic Carriers, 2006, Krems, Austria.
2007 P. J. Cregg, K. Murphy and A. Mardinoglu, Calculation of interactions in magnetic drug targeting by OpenFOAM, OpenFOAM International Conference, 2007, London, United Kingdom.
 

J. O’Dwyer, P. J. Cregg, K. Murphy and A. Mardinoglu, Magnetically targeted nanoparticles in Biomedicine, 14th International Symposium on Metastable and Nano Materials (ISMANAM 2007), 2007, Corfu, Greece.
2008 P. J. Cregg, K. Murphy and A. Mardinoglu, Inclusion of magnetic dipole-dipole interaction in implant assisted magnetic drug targeting, Joint European Magnetic Symposia (JEMS08), 2008, Dublin, Ireland.
  P. J. Cregg, K. Murphy and A. Mardinoglu, Calculation of dipole interactions in magnetic drug targeting, 7th International Scientific and Clinical Applications of Magnetic Carriers, 2008, Vancouver, Canada
2010 A. Mardinoglu and A. Prina-Mello, Validation of implant assisted magnetic drug targeting modelling, Bioengineering in Ireland, 2010, Dublin, Ireland.
  A. Mardinoglu and A. Prina-Mello, Mathematical Modelling of Stent Assisted Magnetic Drug Targeting System in a Stretched Vessel using OpenFOAM Moving Mesh Solver, OpenFOAM International Conference, 2010, Munich, Germany

 

 A. Mardinoglu, M. Curtin, P. J. Cregg, K. Murphy and A. Prina-Mello, Mathematical modelling of magnetic carriers’ collection efficiency with magnetisable stent implant in a mechanically stretched vessel. Future application of implant assisted magnetic drug targeting, 8th International Scientific and Clinical Applications of Magnetic Carriers, 2010, Rostock, Germany.
2011 A. Mardinoglu, Natapol Pornputtapong, Rasmus Agren, Intawat Nookaew, Sergio Bordel Velasco and Jens Nielsen, Validation of the Algorithm Developed for the Automated Reconstruction of Tissue Specific Human Metabolic Networks,  Conference on Constraint-based Reconstruction and Analyses, June 24th-26th,Reykjavik, Iceland, 2011.
  A. Mardinoglu, Natapol Pornputtapong, Rasmus Agren, Intawat Nookaew, Sergio Bordel Velasco and Jens Nielsen, Reconstruction of Tissue Specific Human Metabolic Networks, Translational and Systems Medicine, June 19th-22nd, Stockholm, Sweden, 2011.
Grants, Awards and Prizes
2000-2005 Tekfen, Zorlu and Koc Foundations scholarships during my education
2004-2005 ERASMUS scholarship
2005-2009 Enterprise Ireland for PhD research project under the Applied Research Enhancement (ARE) programme as part of the South Eastern Applied Materials (SEAM) Research Centre at Waterford Institute of Technology, Ireland.
  Conference travel awards  for the 6th and 7th International Scientific and Clinical Applications of Magnetic Carriers.
2006 Cancer Research Ireland (Irish Cancer Society) for an Oncology Scholars Award, Ireland
2011 Knut and Alice Wallenberg Foundation Award, Chalmers to attend 3rd International Conference on Biomolecular Engineering, San Francisco, USA, 2011.
  SBE  Travel Award to attend the 3rd International Conference on Biomolecular Engineering, San Francisco, USA, 2011.
Personal text
I joined Nielsen's Lab on September 2010 after completing my PhD in drug targeting and working as a postdoctoral researcher in creating neuronal networks for nano scale sensors. Currently, I  am working on the project entitled automatic reconstruction of tissue specific human metabolic network. We aim to create network models which integrate all the biological and medical information on genes, proteins, metabolites, disease, drugs and drug targets for a system level study of the relationship between metabolism and disease.  I believe that our research project will not only help us to understand the causes for the human metabolism related diseases, but also to update, validate, and generate hypotheses about the metabolism related diseases.